PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915252

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 114aa MW: 12936 Da PI: 10.2175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915252	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.3e-16	45	111	32	99
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++ t+ + + + We k+ + +++++ +l +GW +F+++n+L++gD+++F+l+++ ++ ++ v+++++ 462915252 45 RGETV-VLQCGRKIWETKMVIHNGRRW-FLNGGWPKFARDNDLRVGDICLFELKKNeDKLTMAVHIISR 111 44344.45557899***77777766.6999******************99999****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	7.7E-4	20	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-18	30	111	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.76E-17	30	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.05E-15	35	110	No hit	No description
Pfam	PF02362	6.1E-14	41	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.476	56	112	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MLPGDGGGPE LCLPGEPSGR LRKRGHVAWR AELGSRYASV HLPARGETVV LQCGRKIWET 60 KMVIHNGRRW FLNGGWPKFA RDNDLRVGDI CLFELKKNED KLTMAVHIIS REQF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915252

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797620.1	8e-43	B3 domain-containing protein Os03g0619800-like isoform X3
Swissprot	Q6AV22	4e-22	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A0A9EDT2	4e-51	A0A0A9EDT2_ARUDO; Uncharacterized protein
STRING	Si035278m	2e-40	(Setaria italica)
STRING	Si037821m	5e-41	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-09	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]