PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915261
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 611aa    MW: 70252.7 Da    PI: 9.1714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915261genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-12301131898
                --HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3  18 lpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                +p ++ +++   +++s+ +tl+   ++++W  ++ +  +++s +y+l++ W eFvk+n L++gD+++F+ + g  ++f   v+++r
  462915261  30 IPIHYGDAYF--PRKSQIVTLQRrGKNKEWHPNFGIrkDGSSYKYLLSGSWLEFVKDNCLRQGDICIFQPTnGVdETFVAIVHLLR 113
                5666666665..456767888874556***88875522666666*************************66355566666666655 PP
2B339.11.4e-121332181698
                EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                 v+p ++ +++   +++s+ +tl+   ++++W  ++ +  +++s +y+l++ W eFvk+n L++gD+++F+ + g  ++f   v+++r
  462915261 133 RVIPIHYGDAYF--PRKSQIVTLQRrGKNKEWHPNFGIrkDGSSYKYLLSGSWLEFVKDNCLRQGDICIFQPTnGVdETFVAIVHLLR 218
                588999998886..446667888884556***88885522666666*************************66355566666666655 PP
3B349.29.4e-163384231198
                HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                ++++ +v+ +++a+e+  +    +++tltl+   + r+W+vk+  + +s+  + t GW +Fv++n+L++ D+++F+l+++ ++ +++v ++ 
  462915261 338 NSLDTIVFDRPYATEYlpD----GEQTLTLMRiGKKRKWKVKM--NPRSDVQIVTLGWHKFVDDNRLDVEDIFLFQLMKNeRRLTMTVYIIH 423
                44588999********542....3458888886788*******..*********************************98888999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.98313115IPR003340B3 DNA binding domain
SMARTSM010190.003316115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1229109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-1329110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-1029113IPR003340B3 DNA binding domain
CDDcd100176.75E-1230113No hitNo description
PROSITE profilePS5086310.87118220IPR003340B3 DNA binding domain
SMARTSM010190.0025123220IPR003340B3 DNA binding domain
CDDcd100172.24E-12129218No hitNo description
SuperFamilySSF1019364.71E-13131206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-13132215IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-11133218IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-16318423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-15319423IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-9324420No hitNo description
PROSITE profilePS5086311.42328425IPR003340B3 DNA binding domain
SMARTSM010197.1E-6331425IPR003340B3 DNA binding domain
PfamPF023628.9E-14337423IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-4479565IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-5480564IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDVPQRILSA SKPTVLLAQD KKLSTLPNAI PIHYGDAYFP RKSQIVTLQR RGKNKEWHPN  60
FGIRKDGSSY KYLLSGSWLE FVKDNCLRQG DICIFQPTNG VDETFVAIVH LLRESKDYSL  120
GGRTRKKAIG GYRVIPIHYG DAYFPRKSQI VTLQRRGKNK EWHPNFGIRK DGSSYKYLLS  180
GSWLEFVKDN CLRQGDICIF QPTNGVDETF VAIVHLLRES KDYSLGGRTR KKAIGGYRVR  240
SCDESRPRAK MTSTIPVKEE SSEGENAPYS RCNYVHRAHL RPLESDESEV HSKHLYMLSD  300
HARLTREQMK NVKEKVHNIQ SEVPIYVAKM NKISVGTNSL DTIVFDRPYA TEYLPDGEQT  360
LTLMRIGKKR KWKVKMNPRS DVQIVTLGWH KFVDDNRLDV EDIFLFQLMK NERRLTMTVY  420
IIHHREKPPL LDCYGCEVKQ ESDVYDSEGP SELSLYMVLG GTGLTPAQEK IVQEKVMDIQ  480
SEMPVFVATM NRNIIGGKGI YAVDFSTLKG APYLPDGNQT LTLHRIGWCR SWCTEMHDQR  540
MLEGELCEFV RDSRLKIGDI CLFEPSMYCV TVDIQWDHKP AHKTKLPWIS TEQFCTSIHT  600
TIRIGPVRFG L
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VWG19e-73A0A0D9VWG1_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172