PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915377
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CO-like
Protein Properties Length: 406aa    MW: 43922.7 Da    PI: 4.887
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915377genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.62e-06445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                C+ +++++   +C+++   lC +C  + H+       Ht++
  462915377  4 QCDFCGDQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
               7*****************************657888889876 PP
2zf-B_box247.8e-084789541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+++ ++++   C   ++ lC++C  ++H+       H++++
  462915377 47 LCDRCTSQPAMVRCLVENVSLCQNCDWNGHSAgseaagHKRQT 89
               7*****************************6688999999876 PP
3CCT64.23.8e-22349392144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  462915377 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 392
                899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.61E-6547No hitNo description
PROSITE profilePS501198.6464390IPR000315B-box-type zinc finger
CDDcd000211.32E-44790No hitNo description
PfamPF006431.7E-54790IPR000315B-box-type zinc finger
SMARTSM003360.424890IPR000315B-box-type zinc finger
PfamPF062036.8E-17349391IPR010402CCT domain
PROSITE profilePS5101715.467349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGAQCDFCGD QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CTSQPAMVRC  60
LVENVSLCQN CDWNGHSAGS EAAGHKRQTI NCYSGCPSSA ELSRLWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDNSLLDI ASATLISDLD NCNRVQSLEG SSSGAGVNLL  180
PNATDETAGP VDSTTPKVPY MPDKDMFCKD TIYEDFCVGD VDLAFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFEMKEAPGG NADEQQKLMQ PANSNGGDSG MSNPGAKGDS SVCIPVRQAR  300
SSLSLSFSGL TGESSAGDHQ DCVVSSVLLM GEPPWHPPGP EGSYAGGSRD SALTRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL CETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658624.10.0uncharacterized protein LOC100282916 isoform X3
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6DB960.0A0A3L6DB96_MAIZE; Zinc finger protein CONSTANS-LIKE 10
STRINGGRMZM2G013398_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-83B-box type zinc finger protein with CCT domain