PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915481
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 320aa    MW: 35178.9 Da    PI: 7.3851
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915481genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51231501128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+evl++ +g+l
  462915481  23 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDLNRIEPWELPDAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVLNAaTGAL 121
                79************************9777.34***************8888899**************************************9878899 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfykgrap+gekt+Wv+heyrl
  462915481 122 LGLKKTLVFYKGRAPRGEKTKWVLHEYRL 150
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-6119173IPR003441NAC domain
PROSITE profilePS5100558.52223173IPR003441NAC domain
PfamPF023659.7E-2724150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQQPHQAMVG DAGPAGAGGE HGLPPGFRFH PTDEELVTFY LAAKVFNGAC CGVDIAEVDL  60
NRIEPWELPD AARMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD REVLNAATGA  120
LLGLKKTLVF YKGRAPRGEK TKWVLHEYRL DGEFAAGRRS CKEEWVICRI FHKAVDQYTK  180
MMMLKSPYYH PMDPSSFCFQ QDSHAALPLP NPSSCSNLSH ALPFHHGHPA MQQPPLEDNE  240
TSKSNNGVLQ LEPNGSGNMS VLPFLPFTSA VAGKSAPPPH QPAGVNAGPQ EPPPLPTWLD  300
AYQHGSFLYE MGPPAAPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-492317317165NO APICAL MERISTEM PROTEIN
1ut4_B2e-492317317165NO APICAL MERISTEM PROTEIN
1ut7_A2e-492317317165NO APICAL MERISTEM PROTEIN
1ut7_B2e-492317317165NO APICAL MERISTEM PROTEIN
3swm_A3e-492317320168NAC domain-containing protein 19
3swm_B3e-492317320168NAC domain-containing protein 19
3swm_C3e-492317320168NAC domain-containing protein 19
3swm_D3e-492317320168NAC domain-containing protein 19
3swp_A3e-492317320168NAC domain-containing protein 19
3swp_B3e-492317320168NAC domain-containing protein 19
3swp_C3e-492317320168NAC domain-containing protein 19
3swp_D3e-492317320168NAC domain-containing protein 19
4dul_A2e-492317317165NAC domain-containing protein 19
4dul_B2e-492317317165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612701e-170BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444766.11e-152protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1E5UVW31e-155A0A1E5UVW3_9POAL; Protein CUP-SHAPED COTYLEDON 3
STRINGSb07g027650.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-86NAC family protein