PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915556
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 231aa    MW: 26072 Da    PI: 8.7693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915556genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.3e-141051721885
                --HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3  18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                lp  f+e++g++  ++ +++l++  +s+ sW+v++    ++++ y  + GWk+F+++n++kegD+++F ++
  462915556 105 LPMVFCEAIGLP-DQPCMIMLKTtlSSSHSWQVRV--LPYKNTsYQRGLGWKSFCRENKIKEGDVCTFNFV 172
                8999*****877.577888888865677*******..555544388899*******************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.20E-1392173No hitNo description
SMARTSM010192.8E-4100185IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-14102184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-14104184IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-11104183IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082105185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVHTFFVYFS FPFANVCTIE KKQEAPSASS QKCKSKTDKS SSEEQKASSK TRCAYMTGPP  60
AWIKKDINTN TIKRYLTTSQ TTTPYPSPPK NKILLGEHGY VTNALPMVFC EAIGLPDQPC  120
MIMLKTTLSS SHSWQVRVLP YKNTSYQRGL GWKSFCRENK IKEGDVCTFN FVEIRLWHVI  180
IERQSNSTCN DDMPQHGFYN VDGADVTYLE SVLLAKPLPS CPSMVAAVLV W
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Gb02050.1.p4e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.16e-07B3 family protein