PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915559
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 110aa    MW: 11923.9 Da    PI: 4.6884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915559genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-1136933899
               EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               + ++ g+ W+v++  ++ +++ +l++GW eF  a+g+++  fv ++++g  ++ l+vk+f++
  462915559 36 VVSPFGKIWRVEI--EREGEEAFLGRGWAEFLAAHGIDVAWFVALRHEG--GGALTVKAFDA 93
               66789********..*******************************765..7778***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-113496IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-113596IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-83693IPR003340B3 DNA binding domain
PROSITE profilePS508639.2064194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAKLLKLLLS PPIERPRITE ELAGCFDAAD VGLALVVSPF GKIWRVEIER EGEEAFLGRG  60
WAEFLAAHGI DVAWFVALRH EGGGALTVKA FDASLCIREF GVPAAAFDMP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915559
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.23e-46putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS751e-24Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A1Z5RBP19e-45A0A1Z5RBP1_SORBI; Uncharacterized protein
STRINGSb06g002075.11e-45(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-09B3 family protein