PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915870
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 171aa    MW: 18738.2 Da    PI: 10.4623
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915870genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.3e-1966100135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  462915870  66 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 100
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-1560110IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.8486096IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-1362101No hitNo description
Gene3DG3DSA:3.30.50.104.7E-1664101IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.01E-1365101No hitNo description
PROSITE patternPS0034406691IPR000679Zinc finger, GATA-type
PfamPF003202.5E-1766100IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
SSPQLLPALC YTLQETDQSG QTKQRFSSGR RRSRARDPAP APAPPMASAD HKIAAIGVPE  60
EGRRSCVECR ATTTPMWRSG PTGPRSLCNA CGIRYRKKRR QEIGLHQKQQ LLQEHHSEAK  120
TDVKESNSNS SSSSSNNMEG VQKRRLLMGV EEAALLLMTL SSSPTSTLLH G
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151818.16e-55GATA transcription factor 22
TrEMBLA0A2T7DM743e-58A0A2T7DM74_9POAL; Uncharacterized protein
STRINGPavir.Ea01306.1.p2e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-17GATA transcription factor 23