PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916079
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 456aa    MW: 50359.2 Da    PI: 8.1817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916079genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-122878146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
        462916079 28 KQRWTPEEEAALRAGVARHGVGNWRTILKDPEfsstlRYRSNVDIKDKWRN 78
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.7412384IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-142479IPR009057Homeodomain-like
SuperFamilySSF466892.08E-152582IPR009057Homeodomain-like
SMARTSM007172.2E-82782IPR001005SANT/Myb domain
PfamPF002493.2E-92878IPR001005SANT/Myb domain
CDDcd116601.91E-192980No hitNo description
SuperFamilySSF467854.57E-17141222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.0E-12142207IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.4E-17143214IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.121144212IPR005818Linker histone H1/H5, domain H15
PfamPF005382.8E-10149205IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSDRTREVDY TWYGDATVYS AEEMGVPKQR WTPEEEAALR AGVARHGVGN WRTILKDPEF  60
SSTLRYRSNV DIKDKWRNIN VIVTASGTRE KVKTAVKKTK AAPKNNDHST AISTVNSDAE  120
DEIVDVKPIA SVSSEACTLI PKKSQSRLDN IILEAVKNLN EPTGSHRTAI ANYIEEQYWP  180
PSDFDHLLSA KLKELTSSGK LIKVNRKYRI APSSPYSEGR RPKMLLLEDI QRESSKLGSD  240
DSKTLTRTQV DAELARMANM TAEEAAVNRK YRIAPSSPYS EGRRPKMLLL EDIQRESSKL  300
GSDDSKTLTR IQVDAELARM ANMTAEEAAV AAARAVAEAE AILAEAEAAV REAEAAEADA  360
QAAQAFAEAA LLTLKDRNAE NLSQLLAKES QIGKLSVRKW AKHNATQLFW FTGAAAAGCL  420
CASVLLLYRR CIPFEVMCIR VIILQLTTTF APLPSS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916079
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817366.11e-135single myb histone 5-like
RefseqXP_025817367.11e-135single myb histone 5-like
RefseqXP_025817368.11e-135single myb histone 5-like
SwissprotC0HIA31e-127SMH6_MAIZE; Single myb histone 6
TrEMBLA0A3L6TP231e-135A0A3L6TP23_PANMI; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]