PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916094
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 249aa    MW: 27026.9 Da    PI: 5.2078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916094genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-19125171353
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                ++GVr+++ +g+W+AeIrdp+    r +r +lg+f+taeeAa+a+++a+++ 
  462916094 125 FRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEA 171
                79******.**********82....48**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-19124190IPR016177DNA-binding domain
SMARTSM003806.6E-32124195IPR001471AP2/ERF domain
PROSITE profilePS5103223.327124189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-24124169IPR001471AP2/ERF domain
PfamPF008473.9E-13125170IPR001471AP2/ERF domain
CDDcd000181.48E-28125190No hitNo description
PRINTSPR003673.8E-11125136IPR001471AP2/ERF domain
PRINTSPR003673.8E-11147163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-5170189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTKKLVPTVE TKQDRKAQFD NQGIQVSNHA DGRTISQEQE HNIIVAALQH VLSGYTTAPP  60
EVVAVASGDA CAVCGIDGCL GCDFFADGHQ AAGGASEVNY GTASVAPGAT GAEKRQRRRR  120
KKNMFRGVRQ RPWGKWAAEI RDPRRAARKW LGTFDTAEEA ARAYDRAALE AYDRAALEFR  180
GPRARLNFPY GQQEEPLPSG GAEESAPGEW QLGGGADGGE GDELWDGFQD LMKLDETDFW  240
FPPFPGAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18121189263ATERF1
3gcc_A4e-18121189263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121KRQRRRRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644531e-51EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
GenBankKJ7275271e-51KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957018.12e-82ethylene-responsive transcription factor ERF109
SwissprotQ9SZ064e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1E5WBD27e-86A0A1E5WBD2_9POAL; Uncharacterized protein
STRINGSi030856m8e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]