PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916164
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 182aa    MW: 20107.6 Da    PI: 4.7349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916164genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-172877255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  462916164 28 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 77
               69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-212886IPR016177DNA-binding domain
SMARTSM003805.0E-362891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-312885IPR001471AP2/ERF domain
PROSITE profilePS5103223.5122885IPR001471AP2/ERF domain
PRINTSPR003676.0E-102940IPR001471AP2/ERF domain
CDDcd000181.21E-292985No hitNo description
PfamPF008473.4E-112977IPR001471AP2/ERF domain
PRINTSPR003676.0E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSMEKMAATD MFQLLPPTIT GQPQQQQQYR GVRKRKWGKW VSEIRQPGTK TRIWLGSFES  60
AEMAAVAHDV AALRLRGRDA QLNFPGSVGW LPRPASTHPA DPALVAARCD DGDGEELYRW  120
AAPGRAGELA GSDEEFDLDL GSPRLWAEMA EAMLLDPPRW DTGVSDADVA QCWSHGSLWD  180
AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-172788163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-172788466ATERF1
3gcc_A9e-172788466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581351e-103EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
GenBankEU9581601e-103EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823072.15e-74ethylene-responsive transcription factor ERF027-like
TrEMBLA0A0A9BXV16e-85A0A0A9BXV1_ARUDO; Uncharacterized protein
STRINGLPERR04G10650.16e-64(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-24ERF family protein