PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916219

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 215aa MW: 24620.9 Da PI: 9.1693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916219	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.1e-53	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+ +yLkkk+ ++++l evikevd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 462916219 10 VPPGFRFHPTDEELLLYYLKKKIGFERFDL-EVIKEVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SY 107 69**************************.99**********963433332566*********************************9.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfy+grap+g+kt+W+mheyrle 462916219 108 RKIGMRKTLVFYRGRAPHGQKTEWIMHEYRLE 139 99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-57	5	148	IPR003441	NAC domain
PROSITE profile	PS51005	55.516	10	190	IPR003441	NAC domain
Pfam	PF02365	5.5E-28	11	138	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-57	178	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFERFDLE VIKEVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTE WIMHEYRLEE ADDAQGGTSV RLLAFSSHAS EILSIHRADD RWCVPDVQED 180 GWVVCRVFKK KCFFKIGGGE GSTSQGADGA GVHMA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	10	191	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	10	191	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	10	191	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	10	191	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	10	191	20	169	NAC domain-containing protein 19
3swm_B	1e-50	10	191	20	169	NAC domain-containing protein 19
3swm_C	1e-50	10	191	20	169	NAC domain-containing protein 19
3swm_D	1e-50	10	191	20	169	NAC domain-containing protein 19
3swp_A	1e-50	10	191	20	169	NAC domain-containing protein 19
3swp_B	1e-50	10	191	20	169	NAC domain-containing protein 19
3swp_C	1e-50	10	191	20	169	NAC domain-containing protein 19
3swp_D	1e-50	10	191	20	169	NAC domain-containing protein 19
4dul_A	1e-50	10	191	17	166	NAC domain-containing protein 19
4dul_B	1e-50	10	191	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916219

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971542	0.0	EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824150.1	1e-126	protein BEARSKIN1-like
Swissprot	Q9SV87	1e-97	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2T7CVD3	1e-127	A0A2T7CVD3_9POAL; Uncharacterized protein
STRING	Sb06g017720.1	1e-124	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	8e-86	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]