PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916234

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 514aa MW: 54877.6 Da PI: 6.6432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916234	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.7	9.1e-34	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+C+++C++a yfp e+ +fa+vhk+FGasnv+kll+++ + +r a++slvyeA ar+rdP G+++ i+ l++ l+q a++a+++ e 462916234 6 PCAGCKHLRRRCVASCAFASYFPPEHGDQFAAVHKVFGASNVSKLLAEVAPGDRAGAVESLVYEATARLRDPAFGCASYITVLEHVLKQGMADVAAARGE 105 7*******************************************************************************************99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.696	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-33	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MPSPPPCAGC KHLRRRCVAS CAFASYFPPE HGDQFAAVHK VFGASNVSKL LAEVAPGDRA 60 GAVESLVYEA TARLRDPAFG CASYITVLEH VLKQGMADVA AARGELAAHV GAAAAFRPFD 120 AASASPEARR AGEEKLDAAL RFAKEQDEKM RAVRAALDAK RKQGSVVAWK DGGKRGHGQP 180 LLNRQMAEAQ SAREQAVIAQ QHGHRAVTGQ GVPEGHPHQQ IAEASESAAA APGAREQAMM 240 ARQAAAAQQQ RHHVVAQNGT GLAFPDGRVR GNPRHQTVQQ IADAQPAEAE MLATSAAASW 300 EKQEMKMRAV RGDELYYHPA MGREHPNPSQ LHMANAKQLA AAEDVAWEQE LMLRQAAAAV 360 TGDQNMSTMM QQDAAAAADF TRDPNVMMML QQAVGGKQQQ HQVEQYAAMV QQIANGQQQL 420 SAAAELVARE KQDLMTVQQQ QQAAAYAQHA MPGSISGAMV AFLVQHQPLL QPLLAELPRE 480 QENDGGDDDG QLSDLAAYFG IPGPSLPPDG RGSS

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MPSPPPCAGC KHLRRRCVAS CAFASYFPPE HGDQFAAVHK VFGASNVSKL LAEVAPGDRA  60
GAVESLVYEA TARLRDPAFG CASYITVLEH VLKQGMADVA AARGELAAHV GAAAAFRPFD  120
AASASPEARR AGEEKLDAAL RFAKEQDEKM RAVRAALDAK RKQGSVVAWK DGGKRGHGQP  180
LLNRQMAEAQ SAREQAVIAQ QHGHRAVTGQ GVPEGHPHQQ IAEASESAAA APGAREQAMM  240
ARQAAAAQQQ RHHVVAQNGT GLAFPDGRVR GNPRHQTVQQ IADAQPAEAE MLATSAAASW  300
EKQEMKMRAV RGDELYYHPA MGREHPNPSQ LHMANAKQLA AAEDVAWEQE LMLRQAAAAV  360
TGDQNMSTMM QQDAAAAADF TRDPNVMMML QQAVGGKQQQ HQVEQYAAMV QQIANGQQQL  420
SAAAELVARE KQDLMTVQQQ QQAAAYAQHA MPGSISGAMV AFLVQHQPLL QPLLAELPRE  480
QENDGGDDDG QLSDLAAYFG IPGPSLPPDG RGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	6	106	11	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	6	106	11	111	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916234

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16457	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-33	ASYMMETRIC LEAVES 2-like 1