PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916399

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

SRS

Protein Properties

Length: 179aa MW: 18404 Da PI: 6.2235

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916399	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	102.6	7.1e-32	9	110	61	154
DUF702 61 skaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 ++a+++a ++ask++r l ++q+++s+t++s+a+++++++t+s lP++v+++avf+cvrv+s+ddge+e+aYq+ v+i+GhvfkG+Lydq 462916399 9 ATATTAAVASASKKPRLL--SSQTTTSHTSTSNATTPRSFDTTSshqdasfrdnLPRQVRAPAVFKCVRVTSIDDGEDEYAYQAMVTINGHVFKGFLYDQ 106 333444466777777765..89999999***********99999**************************************************** PP DUF702 151 Glee 154 G+++ 462916399 107 GVDD 110 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.4E-28	12	109	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	8.4E-29	61	108	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGPASSSPAT ATTAAVASAS KKPRLLSSQT TTSHTSTSNA TTPRSFDTTS SHQDASFRDN 60 LPRQVRAPAV FKCVRVTSID DGEDEYAYQA MVTINGHVFK GFLYDQGVDD GRHASTSNDD 120 STAGMPNMSE LHLGGASASG PGSSGVREGG SSMLPTELYG GGGGGQHMIG GSSYCNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916399

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ858781	1e-110	HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	6e-76	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	6e-36	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A3L6SLU1	4e-78	A0A3L6SLU1_PANMI; Protein LATERAL ROOT PRIMORDIUM 1
STRING	Pavir.Eb03954.1.p	1e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-29	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]