PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916519
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 250aa    MW: 26529.4 Da    PI: 11.1291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916519genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.41.9e-10231250322
                -SS-EEEEEEE--TT-SS-E CS
       WRKY   3 DgynWrKYGqKevkgsefpr 22 
                D+y+WrKYGqK++kgs++pr
  462916519 231 DEYSWRKYGQKPIKGSPYPR 250
                9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.2E-9208227IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-10217250IPR003657WRKY domain
PROSITE profilePS5081112.737224250IPR003657WRKY domain
SuperFamilySSF1182901.57E-7227250IPR003657WRKY domain
PfamPF031062.6E-6231250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAVDLPPEEA ATAGLRSLEL LVSSLSSQAA APHKAAQQQQ HQQPIGEIAD QAVSKFRKVI  60
SILDRTGHAR FRRGPVEAPR APPAVAAPAP AHVPVLHVAP VSAQPAPSSQ PQSLTLDFTK  120
PNLTMSAATS VTSTSFFSSV TAGEGSVSKS RSLLSSGKPP LSGHKRKPCA GAHSEATTNG  180
TRCHCSKRSS SSILALKKCS NTMILPLRKN RVKRTIRVPA ISSKIADIPP DEYSWRKYGQ  240
KPIKGSPYPR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586141e-127KU058614.1 UNVERIFIED: Panicum miliaceum WRKY25-like gene, complete sequence.
GenBankKU0586151e-127KU058615.1 UNVERIFIED: Panicum miliaceum WRKY26-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447056.11e-100WRKY transcription factor WRKY51
TrEMBLA0A0E0DHZ64e-99A0A0E0DHZ6_9ORYZ; Uncharacterized protein
STRINGOMERI10G14590.11e-100(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.22e-23WRKY DNA-binding protein 39