PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462916546

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

EIL

Protein Properties

Length: 173aa MW: 19954.1 Da PI: 9.8982

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916546	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	174.6	1.1e-53	38	154	1	117
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgak.ksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekv 99 e l +rmwkd+++lkr+ker++ l ++++++++ + + ++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd++raWWkekv 462916546 38 EQLARRMWKDRVRLKRIKERQQMLA-LQQVELEKSrQLKPVSDQAMRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNIRAWWKEKV 136 6799***************9866.5555555440445789****************************************************** PP XXXXXXXXXXXXXXXXXX CS EIN3 100 efdrngpaaiskyqaknl 117 +fd+ngpaai+ky+++n+ 462916546 137 KFDKNGPAAIAKYESENM 154 ***********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.0E-53	38	154	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MEQLALIAAE LGDSSDFEVE GIQNLTENDV SDEEIEPEQL ARRMWKDRVR LKRIKERQQM 60 LALQQVELEK SRQLKPVSDQ AMRKKMSRAQ DGILKYMLKL MEVCNARGFV YGIIPDKGKP 120 VSGASDNIRA WWKEKVKFDK NGPAAIAKYE SENMGRKRSL VFVFHPSRIT ILT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916546

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062636	1e-129	BT062636.1 Zea mays full-length cDNA clone ZM_BFb0325I05 mRNA, complete cds.
GenBank	EU946895	1e-129	EU946895.1 Zea mays clone 324672 mRNA sequence.
GenBank	HQ858788	1e-129	HQ858788.1 Zea mays clone UT1802 EIL transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957192.1	6e-95	ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_004957193.1	6e-95	ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	4e-59	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	K3ZRM9	1e-93	K3ZRM9_SETIT; Uncharacterized protein
STRING	Si029258m	2e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3720	37	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	2e-61	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]