PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916576
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 72aa    MW: 8203.21 Da    PI: 4.4119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916576genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.99.1e-151770155
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaee 55
               l pGf FhP+dee++ +yL++kv++ ++++  +i e+di+++ePw+Lp k+k +e
  462916576 17 LKPGFCFHPSDEEIIPCYLTPKVHDYNFTA-VTIGEADINTSEPWELPCKAKMGE 70
               579************************999.66***************6655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-161472IPR003441NAC domain
PROSITE profilePS5100517.0581772IPR003441NAC domain
PfamPF023652.3E-51960IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MEDNHQLQQG AERPLNLKPG FCFHPSDEEI IPCYLTPKVH DYNFTAVTIG EADINTSEPW  60
ELPCKAKMGE KE
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916576
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022989901.14e-23NAC domain-containing protein 92-like
SwissprotQ9FK447e-22NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1J7HLV14e-21A0A1J7HLV1_LUPAN; Uncharacterized protein
TrEMBLA0A444ZP691e-21A0A444ZP69_ARAHY; Uncharacterized protein
STRINGLus100268794e-23(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-25Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]