PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916579
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 327aa    MW: 37744.6 Da    PI: 10.1762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916579genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-122781897
               --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               +p kf++++  +g   +s  ++l ++ g+ W+++l  +kk+ r ++++GW +F   +g+ egD+++F+++g++ f  ++kvf
  462916579  2 MPSKFLKRYvsEGYM-NSPVVVLFSPLGKLWRIEL--EKKQLRLFFAGGWPQFLAFHGISEGDVLLFRYEGNMLF--KFKVF 78
               799999999984333.44489999***********..**********************************9999..55554 PP
2B348.21.9e-15153236186
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                ++k+ ++s++lk+ +l+l+ kf+ + g  k++ +tl+ e es +sW+ +     +++  y+l++GW +F+++n++   D+++F +++
  462916579 153 WIKKKITSYMLKN-LLSLSVKFCHSVGFRKACVITLKTEMESTKSWQDRG--LAYQKVcYLLGEGWVRFCQDNKISKDDMCTFNVIE 236
                78999******98.5********99999*********************9..5665556************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.001181IPR003340B3 DNA binding domain
CDDcd100171.17E-11178No hitNo description
SuperFamilySSF1019361.1E-14186IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-9277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-14281IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.014681IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-14149246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14150246IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-11153243IPR003340B3 DNA binding domain
SMARTSM010190.0077154247IPR003340B3 DNA binding domain
PROSITE profilePS508638.91185248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMPSKFLKRY VSEGYMNSPV VVLFSPLGKL WRIELEKKQL RLFFAGGWPQ FLAFHGISEG  60
DVLLFRYEGN MLFKFKVFGL DGVQKDLKNQ KTGIQQSTDI LEQQESPCRM RKRKSNSEES  120
SREEKKRPKS SLTSLNKTSS QKESDYHIGP PSWIKKKITS YMLKNLLSLS VKFCHSVGFR  180
KACVITLKTE MESTKSWQDR GLAYQKVCYL LGEGWVRFCQ DNKISKDDMC TFNVIETTLW  240
HVVIMRSLTF TDTQEQKESP CSSFSRKGES KNNMPISGRD NTQKGSISDL IKASSTYTRS  300
VYEIGPPSWI QKKITPSSLK KYYLVRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114MRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825232.11e-123LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E31e-129A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGPavir.Gb02310.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-10B3 family protein