PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462917244

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 256aa MW: 26716.9 Da PI: 5.2186

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462917244	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.8	1.9e-34	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+ r kC+++Cvlapyfp + ++fa+vhk +Gasnv+kll++lp+ +r +a+++lvyeAea +dPvyG+v+ i +l+qql++++ la+++ e 462917244 10 PCVACKHRRAKCEPSCVLAPYFPPGHGAQFAAVHKAYGASNVSKLLAELPRADRARAVETLVYEAEAYKEDPVYGCVAYIIALSQQLHESHGRLAAVRGE 109 7****************************************************************************************99999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.035	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-34	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSSSSSEVTP CVACKHRRAK CEPSCVLAPY FPPGHGAQFA AVHKAYGASN VSKLLAELPR 60 ADRARAVETL VYEAEAYKED PVYGCVAYII ALSQQLHESH GRLAAVRGEL ARYVGAAAAS 120 QPLAIANAQQ LSAAAGEVAR EQDMDLMMMM QQAAAYAQHG MPGNMAGATN MAAFLPGGGG 180 SSNAGTFLVQ QQQPQQLQPQ TANAVGFQTD ASLPPPLAAL PRQQQDDGGA DDQFSSDDLT 240 AYFAIPGPNH PSDGSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	10	125	11	126	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	10	125	11	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462917244

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794967.1	8e-40	protein ASYMMETRIC LEAVES 2-like
TrEMBL	A0A1E5VYJ4	2e-39	A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
TrEMBL	A0A3L6SH45	4e-39	A0A3L6SH45_PANMI; LOB domain-containing protein 6
STRING	Si036905m	1e-38	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29435	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	4e-34	LBD family protein