PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462917301

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 756aa MW: 81083.6 Da PI: 8.6536

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462917301	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.4e-12	19	43	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCk+G++Ck++H++ 462917301 19 QPVCEYFLKTGTCKFGSNCKYHHPK 43 789********************96 PP
2	zf-CCCH	37.1	5.3e-12	65	88	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG+Ck+G++CkF+H++ 462917301 65 KECSYYMKTGHCKFGSTCKFHHPE 88 68********************96 PP
3	zf-CCCH	34.7	3e-11	216	242	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG+Ck+G++Ck++H++ 462917301 216 PGQPECQFYLRTGHCKFGATCKYHHPR 242 5789*********************96 PP
4	zf-CCCH	32.6	1.3e-10	264	288	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++a++G+C+yG Ck+ H++ 462917301 264 APPCAYYAQNGYCRYGVACKYDHPM 288 689********************95 PP
5	zf-CCCH	33	1.1e-10	400	426	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC ++ ++G Ck+G++Ck+ H++ 462917301 400 PGQPLCEYYVKNGSCKFGSNCKYDHPR 426 589**********************96 PP
6	zf-CCCH	32.5	1.5e-10	447	470	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++ +tG+Ck+G++CkF+H++ 462917301 447 KECSYYIKTGHCKFGNTCKFHHPE 470 68********************96 PP
7	zf-CCCH	36.9	6.3e-12	595	621	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++Ck++H++ 462917301 595 PGQPECEHYMKTGTCKFGPTCKYHHPQ 621 5789*********************97 PP
8	zf-CCCH	31	4.4e-10	643	667	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++a+ G+Ck+G++CkF H++ 462917301 643 SQPCAYYAQHGFCKFGPTCKFDHPM 667 679********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.267	16	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6E-7	16	43	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.5E-10	19	43	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	19	45	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	21	45	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-5	61	88	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.324	61	89	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-9	65	88	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.14E-5	65	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-4	67	87	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.1E-6	215	242	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.183	215	243	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-9	217	242	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	219	243	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	221	242	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.145	261	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	261	288	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-8	264	288	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	264	290	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	266	286	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.53	399	427	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-6	399	426	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-8	401	426	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-5	402	427	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-5	404	426	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	443	471	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-4	443	470	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	446	470	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-7	447	470	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	449	469	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	594	621	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.056	594	622	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-9	596	621	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-5	598	621	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-6	640	667	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.859	640	668	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	642	670	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-7	642	667	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	644	665	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
FGGGAKNGAA SDFPERLGQP VCEYFLKTGT CKFGSNCKYH HPKQDGSVQS VVLNNNGFPL 60 RPVEKECSYY MKTGHCKFGS TCKFHHPEFV GAPVTPGIYP PLQLASVPSP HAYASLANWQ 120 MGRSPVVPGS YIQGSYTPMM LSSGMVPLQG WSPYPASVNP VASGGTQQTV QAGPLYGIGN 180 RGSSTAIAYG SPYMPYSQST GQSSNNQQEH VFPERPGQPE CQFYLRTGHC KFGATCKYHH 240 PRDLSAPKSN YVFSPLCLPL RPGAPPCAYY AQNGYCRYGV ACKYDHPMGT LGYSSDMPIA 300 PYPLGFPVAA LAPSSSSPDL RPDYISTKDP SVNQVASPVA APEPVGVILP KGGFPPDTIM 360 RAQTSTTNGG SSSPGGVLIG LSNVNGVGRT TSTVEYPERP GQPLCEYYVK NGSCKFGSNC 420 KYDHPREGGF VPVVLNRSGY PLRPGDKECS YYIKTGHCKF GNTCKFHHPE LGVPETSTIY 480 PPVQPSAISS AHPYTQLATL QMGRPPFVPG PFVPGSYPPM MLPSTVMPMQ GWNPYISHMN 540 QVTPSGGQQT VQAPYGLSHQ GPTSSVTYGG HYPQLYHSAG PSSSNKQGYG FPERPGQPEC 600 EHYMKTGTCK FGPTCKYHHP QYFSALNPNY TLNLLGLPLR PGSQPCAYYA QHGFCKFGPT 660 CKFDHPMGSL SYSPSASSLT DMPVAPYPLS FPVAHMAPSA SSSDLRPQYA VTKEPSVNQQ 720 ALPGTTYGHP GSITKVYAPH TLIRSPASTA AGMQAS

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

FGGGAKNGAA SDFPERLGQP VCEYFLKTGT CKFGSNCKYH HPKQDGSVQS VVLNNNGFPL  60
RPVEKECSYY MKTGHCKFGS TCKFHHPEFV GAPVTPGIYP PLQLASVPSP HAYASLANWQ  120
MGRSPVVPGS YIQGSYTPMM LSSGMVPLQG WSPYPASVNP VASGGTQQTV QAGPLYGIGN  180
RGSSTAIAYG SPYMPYSQST GQSSNNQQEH VFPERPGQPE CQFYLRTGHC KFGATCKYHH  240
PRDLSAPKSN YVFSPLCLPL RPGAPPCAYY AQNGYCRYGV ACKYDHPMGT LGYSSDMPIA  300
PYPLGFPVAA LAPSSSSPDL RPDYISTKDP SVNQVASPVA APEPVGVILP KGGFPPDTIM  360
RAQTSTTNGG SSSPGGVLIG LSNVNGVGRT TSTVEYPERP GQPLCEYYVK NGSCKFGSNC  420
KYDHPREGGF VPVVLNRSGY PLRPGDKECS YYIKTGHCKF GNTCKFHHPE LGVPETSTIY  480
PPVQPSAISS AHPYTQLATL QMGRPPFVPG PFVPGSYPPM MLPSTVMPMQ GWNPYISHMN  540
QVTPSGGQQT VQAPYGLSHQ GPTSSVTYGG HYPQLYHSAG PSSSNKQGYG FPERPGQPEC  600
EHYMKTGTCK FGPTCKYHHP QYFSALNPNY TLNLLGLPLR PGSQPCAYYA QHGFCKFGPT  660
CKFDHPMGSL SYSPSASSLT DMPVAPYPLS FPVAHMAPSA SSSDLRPQYA VTKEPSVNQQ  720
ALPGTTYGHP GSITKVYAPH TLIRSPASTA AGMQAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462917301

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967811.1	0.0	zinc finger CCCH domain-containing protein 6
Swissprot	Q5NAW2	0.0	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A0D9UZ82	0.0	A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRING	LPERR01G09410.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	3e-91	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]