PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917439
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 153aa    MW: 16432.8 Da    PI: 9.9436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917439genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS60.63.3e-191279216283
       GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                + vs +++rde+L+ v+ l P+vv++veqe+++n++++ +rf++a+ +y a++dslea+l+r+s er+
  462917439  12 QGVSPANPRDELLRRVRALGPQVVTLVEQELNTNTAPLYARFTDACAHYGAILDSLEATLGRDSAERA 79 
                55677889********************************************************9986 PP
2GRAS521.3e-1686153306374
       GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +er+e ++kWr+r+++aGF+pv+ls  +a+q+ + +  ++  g+ ++ e+g l lgW +r ++++SaWr
  462917439  86 VERCEVFGKWRARFGMAGFRPVALSPGIADQVVARVGPTP-PGFAMKAENGVLRLGWVGRVVTVASAWR 153
                69**************************************.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.171134IPR005202Transcription factor GRAS
PfamPF035141.1E-161279IPR005202Transcription factor GRAS
PfamPF035144.7E-1486153IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEPGAPWRDP RQGVSPANPR DELLRRVRAL GPQVVTLVEQ ELNTNTAPLY ARFTDACAHY  60
GAILDSLEAT LGRDSAERAL GGGGPVERCE VFGKWRARFG MAGFRPVALS PGIADQVVAR  120
VGPTPPGFAM KAENGVLRLG WVGRVVTVAS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1723152237378Protein SCARECROW
5b3h_A2e-1723152236377Protein SCARECROW
5b3h_D2e-1723152236377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917439
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401436.11e-71scarecrow-like protein 8
SwissprotQ9FYR72e-43SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A3L6Q6Y62e-74A0A3L6Q6Y6_PANMI; Scarecrow-like protein 8
STRINGPavir.Ga00626.1.p2e-71(Panicum virgatum)
STRINGPavir.Gb01009.1.p2e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.18e-38SCARECROW-like 8