PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917549
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 705aa    MW: 77692.6 Da    PI: 8.2235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917549genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24134235199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++ +++ +l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el++
  462917549 134 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySQQRPSP-ELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRL 230
                99****************************975454455.9************************************************..3489999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462917549 231 GVRRA 235
                *9996 PP
2Auxin_resp111.77.3e-37260340182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +aha++tks F+++YnPr s+ eF+++++k++++l++++s+GmRfkm++e+ed+ err++G+++g+s++dp  W+ SkW++L
   462917549 260 VAHAVATKSEFHIYYNPRLSHCEFIIPYSKFMRSLSQPFSAGMRFKMRYESEDATERRYTGIITGISEADP-TWRASKWKCL 340
                 79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-42128250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39129237IPR015300DNA-binding pseudobarrel domain
CDDcd100177.63E-22132234No hitNo description
PROSITE profilePS5086313.31134236IPR003340B3 DNA binding domain
PfamPF023624.4E-22134235IPR003340B3 DNA binding domain
SMARTSM010192.5E-23134236IPR003340B3 DNA binding domain
PfamPF065071.8E-30260340IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRRRRRRPPT LAEDPIXXXX PPTPQPRPGA AVCLELWHAC AGPVAPLPRK GSVVVYLPQG  60
HLEQLGDAAS GGGGADVTLH ADAATDEVYA QLALVDENEE MARRLRGGSE DGSGGDADDG  120
DTVKQRFARM PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP SPELVAKDLH  180
GTEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGDDGELRL GVRRAAQLKN  240
GSAFPALYNQ CSNLGTLANV AHAVATKSEF HIYYNPRLSH CEFIIPYSKF MRSLSQPFSA  300
GMRFKMRYES EDATERRYTG IITGISEADP TWRASKWKCL MVRWDDDVDF RRSNRVSPWE  360
VELTGSVTGS HLSTPNSKRL KPCLSHANAD LLVPHGSGCP DFAESAQFHK VLQGQELHGY  420
RTHNSTAAAA QHCEARNMQY IDERSCSSDV SNSIPGVPRL GARAPLGSPG FSYHCSGFGE  480
SQRFQKVLQG QEVLRPYRGP QVDACMRTGS FHQQDGPLAP SVANKWHAQL NGCVYRGPPA  540
SLLPSQTSSP PSVLMFQQSL SKMSQFEFGN AYMDQNGDDR SAMFGHVEGI GRTEQMLMTQ  600
PHNVYGEVAN GHLTVERLHS AIGIGKDVPD NREVRTNSCK LFGISLTEKV PARKEMDCGD  660
ASYPSPFQSL KQQVPKSLGN SCATVHEQRP VVGRVIDVST MDMMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1053137018361Auxin response factor 1
4ldw_A1e-1053137018361Auxin response factor 1
4ldw_B1e-1053137018361Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807170.10.0auxin response factor 15-like
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A1E5W0030.0A0A1E5W003_9POAL; Auxin response factor
STRINGPavir.J08401.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-155ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]