PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917573
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 178aa    MW: 19929.8 Da    PI: 10.8299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917573genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.72.9e-343188259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  462917573 31 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 88
               8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-361590IPR003657WRKY domain
SuperFamilySSF1182907.45E-302290IPR003657WRKY domain
PROSITE profilePS5081131.9042590IPR003657WRKY domain
SMARTSM007744.3E-403089IPR003657WRKY domain
PfamPF031064.2E-273188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MICRAGKGKG EKRPRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTTQK  60
CPVKKRVERS FQDAAVVITT YEGKHTHPIP ATLRGSAHLL AAAHHPHFRM PIRPAQQQQQ  120
QQGHHQAMQQ LVSGSAATAG AQQVMNAAMA SSHAAALDQH ASHLASIAVF HAIYVLWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-292091778Probable WRKY transcription factor 4
2lex_A2e-292091778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008331e-116FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.
GenBankFP1016651e-116FP101665.1 Phyllostachys edulis cDNA clone: bphyem202m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440260.15e-68probable WRKY transcription factor 34
TrEMBLA0A1E5VKW31e-70A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRINGPavir.J10895.1.p4e-68(Panicum virgatum)
STRINGSb09g028660.12e-67(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-50WRKY DNA-binding protein 71