PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917585
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 253aa    MW: 30081.7 Da    PI: 5.4242
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917585genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.14.6e-081662146
   trihelix  1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergfers 46
               +W+ qe+++Li+ar e+e++  + ++++k+ We+v++++re +++++
  462917585 16 QWSTQETRELIAARGELEREAVAaRRSAKTMWEAVAARIREVQVQVE 62
               7****************98877526899**************99984 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMEAGGAGGR DERVPQWSTQ ETRELIAARG ELEREAVAAR RSAKTMWEAV AARIREVQVQ  60
VEEPRQPLQD NGRQCPFFEE LHAVFTERAR NMQRQLLESE SGTYVKKKLK RASGNRSSEE  120
SDDEEDCGEE TEEDKPTHIR KRRAEDKKQQ PRRMPEKSRA GTSSIHELLQ DFLIQQQRID  180
IQWRETMEKR AQERLVYEQE WRQSMQKLER ERLMLEQSWM EREEQRRMNE EARAEKRDAL  240
LTTLLNKLLQ EDL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917585
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-106trihelix transcription factor GT-3b
TrEMBLA0A059Q3B01e-113A0A059Q3B0_9POAL; Transcription factor
STRINGPavir.J40572.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-14Trihelix family protein