PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917795
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 291aa    MW: 32557.8 Da    PI: 6.7987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917795genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-152984148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ v+++G ++W+  a+  g        ++Rt+k+c++rw +yl
        462917795 29 KGPWTEEEDAQLVRFVRLFGERRWDFLAKVSGlrgggcigLRRTGKSCRLRWVNYL 84
                     79****************************************************97 PP
2Myb_DNA-binding46.77.4e-1590133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr T++E+ l+++++ ++G++ W++Iar ++ gRt++++k++w++
        462917795  90 RGRITADEERLILELHGKWGSR-WSRIARSLP-GRTDNEIKNFWRT 133
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6982484IPR017930Myb domain
SuperFamilySSF466892.34E-2727131IPR009057Homeodomain-like
SMARTSM007171.8E-142886IPR001005SANT/Myb domain
PfamPF002497.4E-142984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-193091IPR009057Homeodomain-like
CDDcd001672.07E-103184No hitNo description
PROSITE profilePS5129420.50485139IPR017930Myb domain
SMARTSM007175.9E-1389137IPR001005SANT/Myb domain
PfamPF002495.2E-1390133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2192137IPR009057Homeodomain-like
CDDcd001671.33E-994133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQQGSHRQGL KDGDEQMKTM AMPPATMRKG PWTEEEDAQL VRFVRLFGER RWDFLAKVSG  60
LRGGGCIGLR RTGKSCRLRW VNYLHPGLRR GRITADEERL ILELHGKWGS RWSRIARSLP  120
GRTDNEIKNF WRTRTRKMAL EQRRHGHGDG KQTASPSSSS VSSGSSGSRN SSGSSSSPGT  180
ESSALQERSG DDDAELELEE ATTTTAASQH HQQQQQYQEQ EHGYTMDQLW NEIAAAEASA  240
SYVVDSWGAG GHGSAAVELP SSMPSPVWDF CSDYSLWRID DDEYYKMLEA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25291374103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25291374103C-Myb DNA-Binding Domain
1msf_C2e-25291374103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917795
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281944e-82KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.11e-111LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD381e-108K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-52myb domain protein 59