PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917819
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 214aa    MW: 24291.2 Da    PI: 11.0723
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917819genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-0884134755
        AP2   7 rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                r+++++gr++A+++d  s+n  ++k+   g ++ ++ Aa+a++ a++k++g
  462917819  84 RRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEDAAARAYDLAALKYWG 134
                89*************8888888775555599***99*************98 PP
2AP228.24.9e-09177211138
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t
  462917819 177 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYVT 211
                89****99**********99966...3.6********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.13549142IPR001471AP2/ERF domain
PfamPF008471.0E-484134IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1184144IPR016177DNA-binding domain
SMARTSM003806.0E-1284148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-985144IPR001471AP2/ERF domain
PfamPF008475.2E-5177210IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-5177211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-5178212IPR001471AP2/ERF domain
PROSITE profilePS510329.822178214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKPRKNSTA AAAAANSNSA GAGDVGVRVK PKRTRKSVPR ESPSQRSSVY RGVTRYVQRR  60
SNQSTSQPWP GINHSLMITR LIARRHRWTG RFEAHLWDKN SWNESQNKKG KQGAYDDEDA  120
AARAYDLAAL KYWGPDTILN FPASAYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR  180
GVARHHHNGR WEARIGRVFG NKYLYLGTYV TSVR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396321e-123BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551111e-123BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275881e-123KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.14e-99PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN49e-75AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MXL31e-97J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.12e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-72ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]