PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462918004

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 897aa MW: 101138 Da PI: 6.4559

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462918004	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.5	4.7e-13	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e++ A+ +gLt +qV++WF+ rR ke++ 462918004 20 TKKSPLQIQMLEKFYTEVQYPKPEDMVGYATTVGLTYNQVRIWFKERRRKERR 72 566899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-12	12	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-13	13	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.366	13	73	IPR001356	Homeobox domain
SMART	SM00389	8.5E-12	15	77	IPR001356	Homeobox domain
CDD	cd00086	7.03E-7	20	63	No hit	No description
Pfam	PF00046	1.7E-10	20	72	IPR001356	Homeobox domain
Pfam	PF15612	1.6E-5	524	553	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-10	630	701	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MPPAQMMVSS LGAKRENAGT KKSPLQIQML EKFYTEVQYP KPEDMVGYAT TVGLTYNQVR 60 IWFKERRRKE RREMEATGAR IERQLSSRSS GPRSSSNTSS CSQAPLSESS SISIIGEEHT 120 VRQQVLFHKD YILRKIFRKD GPPLGNEFDP LPQSAHGNIR DAMCYDSSQS RRAVNKRKIM 180 EYTDQRSTVP HEDTVPVRKH GIGKGLMTVW HAMYSHNVEC QGGSSFIDET GCLRSLRPFD 240 ASDRLEDQDN GKKIQIKSQS QSMPRQKVDK RSKTLLNKRK VPCRRVIVPK EHSRMNCHLS 300 VDKSELSERQ TELVALVDDE ELELSELQAD LLAKFPPQSV KMKQPFSMKP WDSSPEMVKK 360 LFQVARFVYT HFGSIDVHPF TFDEFVQAFH DKVREQEFDV NFWIKSLNSL TWVEILRQVL 420 VASGFGSKQH MNRDFYDKIV DLNIPGTSEL EQLICSTLSS DITLFEKIAS SAYRLRVDPR 480 IKGKEDTRSD SEECGSVDDD EDASSSDDEP DGLQKINFPE HERERWLLGL MEGEYSDLSI 540 DEKLDCLVAL IDVVSGACSV PRLEGPPKVS QDAPKVQPRP SGGKIKKSTK NLYQSSDESL 600 NGPGSQRSQG HTVDSRRNDL SGIAHEPQVV LLGSDRRYNS YWLILGPCRA DDPGHRRVYF 660 ESSEDGHWEV VDSPQELLSL LSILDRRGTR EAHLLASLEK RQACLFEAMK KYLEDGNAVG 720 LAVSSDSCHS ETSGDGASPQ TSSVDGASPV SEIENTSVPT GHAVNNSDSS SAIVIEIGRS 780 DDEKILMWER LQAFDKWIWA SFYSILTAVG FDLEERYAVH VATCREPEDM SEVPNHKVLP 840 SQLQALKASI HVIEASMPEV AFVGSWKKSA HKLWVKRLRR TSSLPELLQD HTLVRGS

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MPPAQMMVSS LGAKRENAGT KKSPLQIQML EKFYTEVQYP KPEDMVGYAT TVGLTYNQVR  60
IWFKERRRKE RREMEATGAR IERQLSSRSS GPRSSSNTSS CSQAPLSESS SISIIGEEHT  120
VRQQVLFHKD YILRKIFRKD GPPLGNEFDP LPQSAHGNIR DAMCYDSSQS RRAVNKRKIM  180
EYTDQRSTVP HEDTVPVRKH GIGKGLMTVW HAMYSHNVEC QGGSSFIDET GCLRSLRPFD  240
ASDRLEDQDN GKKIQIKSQS QSMPRQKVDK RSKTLLNKRK VPCRRVIVPK EHSRMNCHLS  300
VDKSELSERQ TELVALVDDE ELELSELQAD LLAKFPPQSV KMKQPFSMKP WDSSPEMVKK  360
LFQVARFVYT HFGSIDVHPF TFDEFVQAFH DKVREQEFDV NFWIKSLNSL TWVEILRQVL  420
VASGFGSKQH MNRDFYDKIV DLNIPGTSEL EQLICSTLSS DITLFEKIAS SAYRLRVDPR  480
IKGKEDTRSD SEECGSVDDD EDASSSDDEP DGLQKINFPE HERERWLLGL MEGEYSDLSI  540
DEKLDCLVAL IDVVSGACSV PRLEGPPKVS QDAPKVQPRP SGGKIKKSTK NLYQSSDESL  600
NGPGSQRSQG HTVDSRRNDL SGIAHEPQVV LLGSDRRYNS YWLILGPCRA DDPGHRRVYF  660
ESSEDGHWEV VDSPQELLSL LSILDRRGTR EAHLLASLEK RQACLFEAMK KYLEDGNAVG  720
LAVSSDSCHS ETSGDGASPQ TSSVDGASPV SEIENTSVPT GHAVNNSDSS SAIVIEIGRS  780
DDEKILMWER LQAFDKWIWA SFYSILTAVG FDLEERYAVH VATCREPEDM SEVPNHKVLP  840
SQLQALKASI HVIEASMPEV AFVGSWKKSA HKLWVKRLRR TSSLPELLQD HTLVRGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462918004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004309	9e-49	AP004309.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0560B08.
GenBank	AP004380	9e-49	AP004380.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0594D10.
GenBank	AP014963	9e-49	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	9e-49	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_025793780.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A3L6TQS0	0.0	A0A3L6TQS0_PANMI; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	6e-89	Homeodomain-like transcriptional regulator