PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462918031
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 724aa    MW: 82045.4 Da    PI: 6.8759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462918031genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-095188241
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                     ++W+ +E +++++a++++G++ Wk+I++ +g +++  ++ 
        462918031 51 LKWSHDELLQFYKAFHRYGKD-WKKISAVVG-RKSSDMVE 88
                     69*****************99.*********.88877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.55448105IPR017884SANT domain
SMARTSM007170.00144997IPR001005SANT/Myb domain
CDDcd001673.86E-55294No hitNo description
SuperFamilySSF466891.3E-85297IPR009057Homeodomain-like
PfamPF002494.2E-85294IPR001005SANT/Myb domain
PfamPF065841.1E-26500599IPR033471DIRP domain
SMARTSM011354.5E-35500601IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MHGYKEYLLG LSQEVFMGPA KVPRKINKIR IKRYEDSSGS SKERKITDVA LKWSHDELLQ  60
FYKAFHRYGK DWKKISAVVG RKSSDMVEAL YNMHRAFLSL PKHEATARGF VALVTGHYNV  120
LDESTNHRGN DHKVRASVKA KKRGAATLQK VYEGPHPDDS FPEGTIPGFS STFKKRYYGG  180
NTGEEQPKSY CWETYPSDTD RAATPENRDT ISSTKDDNEV MNSNGTNFPT NESSPDGRFL  240
VMETTEATQG QTFLETNRTS DTEICQTQQH LKRRRIEQTM GGCRISKVEH ETMMVAEEGN  300
KSVGLLDQKQ ILREFFSADD VLVLDVLQSL LNAPNEISNL NINITPGTLE ENDSALSRGK  360
DEEHSPLDLS EQEKPVIECT ASKALHKKHE KLSIREEPAK ETNAVHAIDI TEGSSYSESA  420
ETTRDLMGST VNISSEMCAY APKEIEPEIS MSRRSKMKFE MNRKTKYVSC NGISDNLQAN  480
KLLHCLSSEL LRRWCTYEWF YSAIDFPWFT NSDLAKYVND VNLSHVPRLT RSEWITIRSS  540
LGKPRRFSNH FMVTEKENLE DYREKVRKCY AQLSVGLMDY LPAGLALPFS IGQQVVVLHP  600
RSRELCDGKV VMVKPDCCKV QFDNPELGVE VVKDTDCMPA NWLDNLPENI RSSSFSCNVR  660
NVMVMEHIPK LTTSDNQDYT SNEVSISELP KSLHTSNEQL KSAGDTGAMQ RTAWTLTGQY  720
STKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462918031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678605.10.0protein ALWAYS EARLY 1 isoform X1
RefseqXP_022678606.10.0protein ALWAYS EARLY 1 isoform X1
TrEMBLK4A5Q30.0K4A5Q3_SETIT; Uncharacterized protein
STRINGSi034207m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-61DNA binding