PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462918093
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 431aa    MW: 47624.1 Da    PI: 9.8924
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462918093genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.11.2e-17471001371
    E2F_TDP  13 flkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                f++l+ + +++ + l+++ak+L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  462918093  47 FVALYDRDNAEPIGLDDAAKSL---GV--ERRRIYDIVNVLESVGILMRKAKNRYTWIG 100
                9999999999************...**..****************************98 PP
2E2F_TDP74.79.4e-24193272170
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                rkeksL+lltq+f+kl+ + e ++++l++++k L++e     ++++k RR+YDi+NVL++lnliek     ++k+++rw 
  462918093 193 RKEKSLGLLTQNFVKLFLTMEVDAISLDQASKLLLAEghedtNMRTKIRRLYDIANVLSSLNLIEKvhqenTKKPAFRWL 272
                79*****************************************************************9999999****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.9E-1737100IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-1947101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.9E-1647100IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.49E-1251101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.4E-22190272IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-30193273IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.5E-19194272IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.99E-12195271IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MESASPATTR TAARRSRSAS SAPSELLPPS ARPVTHIFLS SLRPLLFVAL YDRDNAEPIG  60
LDDAAKSLGV ERRRIYDIVN VLESVGILMR KAKNRYTWIG FDGVPMALRE LKERALKEKF  120
GLAPLQKEQQ SAASIVVSNC NVSSPMAVKM SDDEDDKLGD PDGDTDSEKL SQTVSNPSDK  180
PGAPQCRLRS DHRKEKSLGL LTQNFVKLFL TMEVDAISLD QASKLLLAEG HEDTNMRTKI  240
RRLYDIANVL SSLNLIEKVH QENTKKPAFR WLTKGGRPKT EAGVTVDVPL SAKTVSNKRT  300
FGTDLTNINR SNLDSTIQKK AKLAQSGSDI LNSCKLSVQS RLGQGSRSGF VYGPFHPSSA  360
RKQEPGGANK SGQRERAEDW ESLSALFRPQ YQNQGLGDLF AHYVEAWKTW LLKLPDILPL  420
VVRIPENESV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-305926732232Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462918093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A2S3GT590.0A0A2S3GT59_9POAL; Uncharacterized protein
STRINGOMERI02G29820.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-89DP-E2F-like 1