PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919035
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 220aa    MW: 23606.4 Da    PI: 5.102
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919035genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS94.12.1e-2958218201374
       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                al+Vn++  l ++       +  rd++L++ + l P++v+v++++ad++s+s++ r++ ++++++ lfd+l++++pr+s  r   E++ +gr+i++vv  
  462919035  58 ALVVNCQSWLRHVA------PGSRDAFLDAARALGPRLVTVTDEDADLDSPSLASRIAGCFDFHWILFDALDTSAPRDSPRRLDHEAA-VGRKIESVVD- 149
                68999999999997......455789*************************************************************9.********96. PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 gae   r e+ ++  +r+++ GF  vp++++aa +a +ll++++  g+ v+ e++ lvl+Wk++  v + aW+
  462919035 150 -GAE---RAESGARLADRMRRNGFAGVPFDDEAAGEAGRLLSEHA-TGWGVKREEDMLVLTWKGHGAVYTGAWT 218
                .454...5577888899****************************.99*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.3711199IPR005202Transcription factor GRAS
PfamPF035147.4E-2758218IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEQELRSSSG GGGGLKAHSS VCFSGALIDG PRIQQLLLHC AAALESNDVT LAQQAMWALV  60
VNCQSWLRHV APGSRDAFLD AARALGPRLV TVTDEDADLD SPSLASRIAG CFDFHWILFD  120
ALDTSAPRDS PRRLDHEAAV GRKIESVVDG AERAESGARL ADRMRRNGFA GVPFDDEAAG  180
EAGRLLSEHA TGWGVKREED MLVLTWKGHG AVYTGAWTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1558220296475Protein SHORT-ROOT
5b3h_B7e-1659220243421Protein SHORT-ROOT
5b3h_E7e-1659220243421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270021e-139KJ727002.1 Zea mays clone pUT3978 GRAS transcription factor (GRAS62) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440025.11e-99scarecrow-like protein 32
TrEMBLC5Z0F52e-98C5Z0F5_SORBI; Uncharacterized protein
STRINGSb09g024690.14e-99(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-37GRAS family protein