PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919113
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 261aa    MW: 29090.8 Da    PI: 6.7997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919113genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.41.6e-096784219
               --SS-EEEEEEE--TT-S CS
       WRKY  2 dDgynWrKYGqKevkgse 19
               dDgynWrKYGqK+vkgs 
  462919113 67 DDGYNWRKYGQKVVKGSA 84
               8***************96 PP
2WRKY109.41.7e-34153211159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  462919113 153 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 211
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-86385IPR003657WRKY domain
SuperFamilySSF1182909.42E-76584IPR003657WRKY domain
PROSITE profilePS508119.5576783IPR003657WRKY domain
PfamPF031061.4E-56784IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37139213IPR003657WRKY domain
SuperFamilySSF1182909.81E-30145213IPR003657WRKY domain
PROSITE profilePS5081137.413148213IPR003657WRKY domain
SMARTSM007747.0E-40153212IPR003657WRKY domain
PfamPF031061.5E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFDNMEQPSL SAAATSSEAQ QHMNSAADMA GVSDMRMVTS KNDNASFQSA EASQRYQVNA  60
PVDKPADDGY NWRKYGQKVV KGSAKRDQEA IYGQSEQVSG LSDGDDMDDG ESRPHEVDDG  120
DSENKRRNIQ ISSQRTLSEP KIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT  180
FAGCNVRKHI ERASSDPKAV ITTYEGKHNH EPPVGRGSNQ NAGMSQQKAQ NNQASLSRTD  240
FSNANQRQMG QMGILQFKRE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41144213877Probable WRKY transcription factor 4
2lex_A2e-41144213877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919113
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341961e-146BT034196.1 Zea mays full-length cDNA clone ZM_BFc0028G06 mRNA, complete cds.
GenBankBT0538111e-146BT053811.1 Zea mays full-length cDNA clone ZM_BFb0199A02 mRNA, complete cds.
GenBankBT0548221e-146BT054822.1 Zea mays full-length cDNA clone ZM_BFb0078G18 mRNA, complete cds.
GenBankKJ7285321e-146KJ728532.1 Zea mays clone pUT6837 WRKY transcription factor (WRKY62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.21e-131uncharacterized protein LOC100281507
SwissprotQ9ZQ703e-52WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A3L6D8411e-135A0A3L6D841_MAIZE; Putative WRKY transcription factor 3
TrEMBLB7ZZ271e-136B7ZZ27_MAIZE; Uncharacterized protein
STRINGGRMZM2G076657_P011e-130(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.18e-50WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]