PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919140
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 167aa    MW: 18444.7 Da    PI: 8.8261
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919140genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof69.74.4e-221352660
     zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
               ++qPryfCkaCrryWt+GG+lrnvP+Ggg+ knk+
  462919140  1 MKQPRYFCKACRRYWTQGGSLRNVPIGGGCHKNKR 35
               68*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088418.184135IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-12135IPR003851Zinc finger, Dof-type
PfamPF027012.8E-17235IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKQPRYFCKA CRRYWTQGGS LRNVPIGGGC HKNKRGSPSF LPPSSSSSSS SSINEQLQQH  60
LVPASSTAGF PSVLPTFWED FMEDNTSLLL DVTSSDLLPL TSNMQDLEGF NYESYLFDDM  120
SPTQAQAADT NRSSKAPIIL AFQRSPTNVA RKAHVFAYVG PKTEKKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105400.25e-20dof zinc finger protein PBF
SwissprotO244635e-21PBF_MAIZE; Dof zinc finger protein PBF
TrEMBLB2LUU12e-19B2LUU1_MAIZE; Dof-type zinc finger protein (Fragment)
STRINGGRMZM2G146283_P012e-19(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3777923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-17TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Lang Z, et al.
    Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.
    J. Hered., 2014 Jul-Aug. 105(4): p. 576-582
    [PMID:24683184]
  2. Zhang Z,Zheng X,Yang J,Messing J,Wu Y
    Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7
    [PMID:27621432]