PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919167
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 688aa    MW: 77084.9 Da    PI: 5.8713
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919167genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22116216198
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v
  462919167 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL--RSETGEQRV 212
                99****************************96444.45569999******************************************999..447777899 PP

                EEE- CS
         B3  95 kvfr 98 
                +v+r
  462919167 213 GVRR 216
                9997 PP
2Auxin_resp92.38e-31242323183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F v+Y+Pr s+s+++v+++k++++ k+ + +G+Rfkm+fe++d++ +++sGt+v+  dl p +W++S+W+ Lk
   462919167 242 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLESSKIGFNLGTRFKMSFEGDDVPVKKFSGTIVDKGDLAP-QWQGSEWKTLK 323
                 789********************************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-37107245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-36110231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-17114216No hitNo description
SMARTSM010199.9E-18116218IPR003340B3 DNA binding domain
PfamPF023622.9E-20116216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251116218IPR003340B3 DNA binding domain
PfamPF065072.4E-26242323IPR010525Auxin response factor
PfamPF023098.5E-7577667IPR033389AUX/IAA domain
PROSITE profilePS5174518.707590672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAQAGEPELF TELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV  60
PNKILCKVVN VELKAETETD EMYAQITLQP DPDQVNLPTL PDPPLPELPR PVVHSFCKIL  120
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL  180
LTTGWSTFVT SKKLIAGDAF VYLRSETGEQ RVGVRRLVQK QSTMPASVIS SQSMHLGVLA  240
SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLESSKIGF NLGTRFKMSF EGDDVPVKKF  300
SGTIVDKGDL APQWQGSEWK TLKVQWDEAT NFNGPERVSS WEIEPFDASA PGINIPVQQS  360
TKNKRPRETA ESQDVHALEP AQEFWLSGMP QQHEKAGTGS SDPNCISGHQ VVWTSERPGH  420
GAMGSSSVCQ NTVVLESWLK DFNSSTKGVS PTLSDISQKL FQITSNDTRV APWPGFSAYQ  480
SEEPSSKLSC NTALCSYRTE EVTPNFPNAV EEKKEPNMFR LFGVDLINHT KSTASAAKMN  540
SGVGDTSTRA ACSYEDSGQL SALSKVTKDH TQFMNESPRE IQSHQSSSAR TRIKVQMRGN  600
AVGRAVDLAN LYGYEKLIGE LEEMFEIKYL DSKEKWKVAF TDDDGNTLEI GDGPWLEFCQ  660
RVKKIVIYPV EDGRDIEPRH EQDLKTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-146934819357Auxin response factor 1
4ldw_A1e-146934819357Auxin response factor 1
4ldw_B1e-146934819357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919167
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967361.10.0auxin response factor 1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLK3XF710.0K3XF71_SETIT; Auxin response factor
STRINGSi000540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]