PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919173
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 74aa    MW: 8337.66 Da    PI: 6.9264
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919173genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.11.1e-241864451
    G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
               ++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  462919173 18 VDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIECLTRHNIASHLQ 64
               68****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.23E-161765IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-241865IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-221864IPR009057Homeodomain-like
PfamPF002491.1E-61964IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MKSEAFTANC STIAHFGVDW TPELHRRFVQ AVEQLGIDKA VPSRILEIMG IECLTRHNIA  60
SHLQVAIVIY WCGN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919173
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993094e-45FP099309.1 Phyllostachys edulis cDNA clone: bphyem212o08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022877224.11e-28transcription activator GLK1-like isoform X1
SwissprotQ5NAN55e-27GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A067E6T81e-26A0A067E6T8_CITSI; Uncharacterized protein
TrEMBLA0A2I4DEU08e-27A0A2I4DEU0_JUGRE; transcription activator GLK1-like isoform X1
STRINGPavir.J11422.1.p5e-28(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-27GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]