PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919686
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 213aa    MW: 23672.5 Da    PI: 4.6482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919686genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.12.7e-2618108192
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lppGfrF+Ptd elvv+yL++++ g +l++   i++v+i+ +eP+dL p      e e y +++r+ ky+tg r+nrat +gyWk+tgk+k+v
  462919686  18 LPPGFRFEPTDAELVVHYLRRRALGVPLPAGVDISDVRILAHEPSDLlP--PGWAEPERYLYTRREAKYRTGCRANRATGAGYWKNTGKEKPV 108
                79****************************555**************43..3346789********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3611146IPR003441NAC domain
PROSITE profilePS5100525.98818170IPR003441NAC domain
PfamPF023651.3E-1419124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MELTSGFSSP AMDARPQLPP GFRFEPTDAE LVVHYLRRRA LGVPLPAGVD ISDVRILAHE  60
PSDLLPPGWA EPERYLYTRR EAKYRTGCRA NRATGAGYWK NTGKEKPVPP TGTKTDWMVH  120
EYRLAGAGLL PWRRSEGWLL CRVFRKTGSA VPVVEVEEEE EAVVEDTEQE EEDEDAAPAA  180
GFIDFFARAE AAQQQQQGRG SLPVVSSSCL TDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-261314810170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575526.14e-68NAC domain-containing protein 83
SwissprotO227981e-35NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A3L6RAA22e-73A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGPavir.Cb00769.1.p7e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-37NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]