PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920346
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 224aa    MW: 25096.9 Da    PI: 6.0857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920346genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16551147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+WT+eEd +l   ++++G  +W++ ++  g+ R++k+c++rw +y
        462920346  5 RGPWTPEEDRILTAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINY 51
                     89******************************99**********998 PP
2Myb_DNA-binding23.61.2e-0775982347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ gRt++++k+ w+++
        462920346 75 RWSAIAARLP-GRTDNEIKNVWHTH 98
                     6*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.893156IPR017930Myb domain
SuperFamilySSF466894.97E-22195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-19351IPR009057Homeodomain-like
SMARTSM007171.7E-10454IPR001005SANT/Myb domain
PfamPF002495.2E-14551IPR001005SANT/Myb domain
CDDcd001671.08E-10751No hitNo description
Gene3DG3DSA:1.10.10.606.3E-117598IPR009057Homeodomain-like
PfamPF002499.8E-67598IPR001005SANT/Myb domain
PROSITE profilePS500906.0177599IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGLKRGPWTP EEDRILTAHI ERHGHSNWRA LPKQAGLLRC GKSCRLRWIN YSHHPAPPNA  60
RQQNMRTKLL FCHFRWSAIA ARLPGRTDNE IKNVWHTHAP KRKAKKQQQP QPDVVVLDGP  120
TTVSVSSPEQ SLSTTTSATT TTTDYSAASS MENADSFTSE EFQIDDSFWT ETLVMTASED  180
SSDSGMEIGD DFGASAAPET SSDDMDFWLR LFMQAGDMQN LAEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1139725122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920346
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701634e-57KJ670163.1 Saccharum arundinaceum Myb4 transcription factor (Myb4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106008.17e-91transcription factor MYB39
SwissprotQ6K1S69e-75MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A3L6F1W86e-92A0A3L6F1W8_MAIZE; Myb-related protein Myb4
TrEMBLB6U8A66e-92B6U8A6_MAIZE; Myb-related protein Myb4
STRINGGRMZM2G127857_P013e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.16e-44myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]