PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920610
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 526aa    MW: 56719.9 Da    PI: 4.8657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920610genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
        462920610 16 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 63
                     79******************************************9986 PP
2Myb_DNA-binding52.89.4e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
        462920610  69 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 112
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.191163IPR017930Myb domain
SuperFamilySSF466891.16E-3113110IPR009057Homeodomain-like
SMARTSM007176.1E-151565IPR001005SANT/Myb domain
PfamPF002492.8E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241770IPR009057Homeodomain-like
CDDcd001672.02E-111863No hitNo description
PROSITE profilePS5129425.45464118IPR017930Myb domain
SMARTSM007171.7E-1768116IPR001005SANT/Myb domain
PfamPF002495.7E-1669112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2671116IPR009057Homeodomain-like
CDDcd001676.41E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
PADDGGSPNR GPSLKKGPWT SAEDAILVDY VKKHGEGNWN AVQKNTGLSR CGKSCRLRWA  60
NHLRPNLKKG AFTPEEERLI IQLHAKMGNK WARMAAHLPG RTDNEIKNYW NTRVKRCQRA  120
GLPIYPASVC NQSSNEDEQV SDDFNCGDNL GSGLLNGNGL FLPDFTSDNF IGNPDALTYA  180
PQLSAVSISN LLGQSFASRS CSFLDHVDQT GILKHSGSVL PSLSDTVDGV LSSVDHFSND  240
SEKLKQALGF DYLSEATACS KTIAPFGVAL SGSHAFLNGT FSASRPTNGP LKMELPSLQD  300
TESDPISWLK YTVAPAMQPT ELVDPYLQSP TATPSVKSEC ASPRNSGLLE ELLHEAQVLR  360
SGKNQQLSVR SSSSSADTPC ENATAVSAEF DICQEYWEEH PSSFPIEYTP FSGNSFTEST  420
PPVSAASPDI FQFSKISPAQ SPSMGSGDPV TEPKYESVGS PHPDNFRPDA LFSGNTTDVS  480
IFNDAIAMLL GNGVSADSKP VLGDGTAFNY STWSNMPHVC EMSEFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-331211623126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920610
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819835.10.0transcription factor GAMYB-like
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A2S3HQQ90.0A0A2S3HQQ9_9POAL; Transcription factor
TrEMBLA0A2T7DFC70.0A0A2T7DFC7_9POAL; Transcription factor
STRINGPavir.Ea03206.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.12e-85myb domain protein 65