PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462920815

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 418aa MW: 43578.4 Da PI: 5.3307

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462920815	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.9	1.1e-13	227	277	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +rrkq+NRe+ArrsR RK a + eLe+ v++L eN++L +l +++ 462920815 227 RLQRRKQSNRESARRSRSRKAAHLNELETQVAQLRVENSSLLRRLADVNQK 277 679**************************************9888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	223	287	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.231	225	279	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-10	226	279	No hit	No description
Pfam	PF00170	4.7E-11	227	275	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-9	227	276	No hit	No description
Pfam	PF12498	4.5E-50	294	411	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MERVFSVEEI ANPYWAPPQP QAPTTGAAAA PIAGGGGTGG SRGGGVPAVD GAGAMNRCPS 60 EWYFQKFLEE AVLDSPGPGT GAGRGLGGVE QVERKPPVGA PGASSSGVVD PVEYNAMLKQ 120 KLEKDLAAVA MWRTSSATPP ERSAASSSLP NVEVPRVGPL NSIGGNGIPV QSKPAGGPAG 180 GLGPQVVQNA DVLVKQATSS SSREQSDDDD MEGEAETTGN ANPVQQRLQR RKQSNRESAR 240 RSRSRKAAHL NELETQVAQL RVENSSLLRR LADVNQKFND AAVDNRVLKA DVETLRAKVK 300 MAEDSVKRVT GMNALFPAVC DMSSLSMPFQ GSPSDSTSDA AVPIQDDPNS YFASPSEVGA 360 NNSYMPDIAS STQEDDAFIN ATLAAGKMGR TAPLHRVASL EHLQKRMCGG PASSGSTS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MERVFSVEEI ANPYWAPPQP QAPTTGAAAA PIAGGGGTGG SRGGGVPAVD GAGAMNRCPS  60
EWYFQKFLEE AVLDSPGPGT GAGRGLGGVE QVERKPPVGA PGASSSGVVD PVEYNAMLKQ  120
KLEKDLAAVA MWRTSSATPP ERSAASSSLP NVEVPRVGPL NSIGGNGIPV QSKPAGGPAG  180
GLGPQVVQNA DVLVKQATSS SSREQSDDDD MEGEAETTGN ANPVQQRLQR RKQSNRESAR  240
RSRSRKAAHL NELETQVAQL RVENSSLLRR LADVNQKFND AAVDNRVLKA DVETLRAKVK  300
MAEDSVKRVT GMNALFPAVC DMSSLSMPFQ GSPSDSTSDA AVPIQDDPNS YFASPSEVGA  360
NNSYMPDIAS STQEDDAFIN ATLAAGKMGR TAPLHRVASL EHLQKRMCGG PASSGSTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462920815

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463740.1	0.0	light-inducible protein CPRF2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A1D8RJ53	0.0	A0A1D8RJ53_ELECO; Opaque 2 protein
STRING	Sb01g005170.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	2e-43	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]