PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462920937

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 369aa MW: 39735.1 Da PI: 6.2385

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462920937	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.5e-11	176	234	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ l+ l++e+ 462920937 176 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLSLLQRDTTGLTTEN 234 9**********************************************998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-17	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.967	174	237	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-9	176	233	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.9E-11	176	231	No hit	No description
SuperFamily	SSF57959	2.67E-11	176	228	No hit	No description
CDD	cd14703	9.10E-26	177	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MPGDGGCGDG LPPQSSRTAG APPKSATPPP EYDISRMPDF PTRNTGHRRA HSEILSLPDD 60 LDLSAPGGGD GPSLSDENDE ELFSMFLDVD KLNSACGASS EAEAESSSAA GDVGEGNGPG 120 HAPRPRHQHS QSMDESMSIK AEELVGAPGM EGMSPAEAKK AVSAAKLAEL ALVDPKRAKR 180 IWANRQSAAR SKERKMRYIS ELERKVQTLQ TEATTLSAQL SLLQRDTTGL TTENSELKIR 240 LQTMEQQVHL QDALNDTLRT EVQRLKVATG QVSNGGGGMS MNFGHMPRAF GGNQQMFHNN 300 QSMQSMLATH QLQQLQLHPQ PQQQSLHPQH QQQSLQSLQA QQLQQAAREF KMKGAMGSLG 360 QWGDGSSGS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MPGDGGCGDG LPPQSSRTAG APPKSATPPP EYDISRMPDF PTRNTGHRRA HSEILSLPDD  60
LDLSAPGGGD GPSLSDENDE ELFSMFLDVD KLNSACGASS EAEAESSSAA GDVGEGNGPG  120
HAPRPRHQHS QSMDESMSIK AEELVGAPGM EGMSPAEAKK AVSAAKLAEL ALVDPKRAKR  180
IWANRQSAAR SKERKMRYIS ELERKVQTLQ TEATTLSAQL SLLQRDTTGL TTENSELKIR  240
LQTMEQQVHL QDALNDTLRT EVQRLKVATG QVSNGGGGMS MNFGHMPRAF GGNQQMFHNN  300
QSMQSMLATH QLQQLQLHPQ PQQQSLHPQH QQQSLQSLQA QQLQQAAREF KMKGAMGSLG  360
QWGDGSSGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462920937

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804457.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-151	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A2T7EUP0	0.0	A0A2T7EUP0_9POAL; Uncharacterized protein
STRING	Pavir.J04459.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	4e-90	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]