PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462921086

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 228aa MW: 25152.8 Da PI: 9.8014

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462921086	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.9e-06	63	81	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk F+r nL+ H+r H 462921086 63 VCGKGFKRDANLRMHMRAH 81 6****************99 PP
2	zf-C2H2	11.8	0.00076	157	180	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+L++H + + 462921086 157 YVCNRCNlKHFSVLSDLRTHEKHC 180 9*******************9876 PP
3	zf-C2H2	11.9	0.0007	189	204	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg+sFsrk+ L+ H+ 462921086 189 CGTSFSRKDKLVGHLA 204 **************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-5	63	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.432	64	86	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MESGGAFMGA TAAESESQCH ALLYNLSVLK DKVQQLQPLV GLALXXXXXX XPRDHHRRVV 60 DDVCGKGFKR DANLRMHMRA HGDEYKSSAA LANPAKQQAG AGAGEEAAAG GSNNNRSYYS 120 CPQEGCRWNR KHAKFQPLKS VICAKNHYKR SHCPKMYVCN RCNLKHFSVL SDLRTHEKHC 180 GDHRWLCSCG TSFSRKDKLV GHLALFAGHH PAVPLDTTRA NGGKRTSA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:23935008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462921086

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063290	1e-101	AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBank	AP004587	1e-101	AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBank	AP005544	1e-101	AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBank	AP014964	1e-101	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-101	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649514.1	6e-89	protein SENSITIVE TO PROTON RHIZOTOXICITY 2
Swissprot	Q0WT24	1e-76	STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBL	A0A3L6RHJ3	1e-88	A0A3L6RHJ3_PANMI; Uncharacterized protein
TrEMBL	J3MVD0	1e-88	J3MVD0_ORYBR; Uncharacterized protein
STRING	OB08G30610.1	2e-89	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7441	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-76	C2H2 family protein