PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921553
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 251aa    MW: 28162.9 Da    PI: 11.4659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921553genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462921553  6 FVCEVCNKGFQREQNLQLHRRGH 28
               89*******************88 PP
2zf-C2H213.10.000383105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H + +
  462921553  83 WKCDKCSKRYAVQSDWKAHSKIC 105
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-8528No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094628IPR007087Zinc finger, C2H2
SMARTSM003550.0041628IPR015880Zinc finger, C2H2-like
PfamPF121711.3E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.78E-878103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPL QAQRRRVYLC PEPTCVHHDP  60
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAQESAR LPPTSLSSLT TANAGNMALS LSQVGSHLNS TLGHDGHGHH  180
HHPSPELLRL GGTAGRXXXX XPPARPRPSA RRRARRRRPP SSSTRGPRTS AITTGPAMGP  240
IHSCRPSRST A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3679145369Zinc finger protein JACKDAW
5b3h_F6e-3679145369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462921553
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197691.11e-129protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197692.11e-129protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197693.11e-129protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC15e-94IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ9ZUL35e-93IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A453CME61e-128A0A453CME6_AEGTS; Uncharacterized protein
STRINGTraes_2BL_58A855C7B.21e-128(Triticum aestivum)
STRINGTraes_2DL_540050272.21e-128(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.27e-97indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]