PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921767
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 213aa    MW: 23370.9 Da    PI: 4.9484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921767genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141978148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g            + R++k+c++rw +yl
        462921767 19 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGkqapelahtltwLQRCGKSCRLRWINYL 78
                     678*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8081482IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-211581IPR009057Homeodomain-like
SMARTSM007171.7E-101880IPR001005SANT/Myb domain
PfamPF002495.6E-131978IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-1821105IPR009057Homeodomain-like
CDDcd001673.06E-102278No hitNo description
PROSITE profilePS500904.05479146IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-782105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRLSCSGGG GGVQAKLRKG LWSPEEDEKL YNHIIRHGVG CWSSVPKLAG KQAPELAHTL  60
TWLQRCGKSC RLRWINYLRP DLKRGSFSQQ EEDLILALHE ILGNRSYDAG KAAAFVADYS  120
SVLDVSENLG YGESSSNSSN WNCAAEMSNV LDSDVLDWAS NGGAGAKAEP FTEMEQQPEH  180
GGGYGDDDAL EHKFALPCHE QSLAHFDFSL EYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-121711125106MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462921767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5609802e-58FJ560980.1 Saccharum hybrid cultivar Co 86032 MYB transcription factor (MYB23) pseudogene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.17e-54myb-related protein Hv33
SwissprotP200272e-43MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A446JAC38e-60A0A446JAC3_TRITD; Uncharacterized protein
STRINGTRIUR3_16875-P14e-59(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3760022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-42myb domain protein 86