PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921890
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 290aa    MW: 31182.2 Da    PI: 10.3277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921890genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.8e-154488347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
        462921890 44 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 88
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9683793IPR017930Myb domain
SuperFamilySSF466899.33E-183893IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-184092IPR006447Myb domain, plants
SMARTSM007171.4E-114191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-124487IPR009057Homeodomain-like
CDDcd001671.81E-104489No hitNo description
PfamPF002491.6E-124488IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNLAAAAAS VDGGGAGDGY LSDGGLMQSA GKRRRAQERK KAVPWTEEEH RTFLAGLEKL  60
GKGDWRGIAK NFVTTRTPTQ VASHAQKYFL RQTNPNKKKR RSSLFDMMPS DASQVPSYPI  120
LPPPMAKVHD VVAMTKQLQN SKLEAVSSSN SANVSSQVGR GSLDLPPIPS FKPPKIDSNF  180
SKMSPMERWR TPFPFRPIPR APEGTSSIAA TANIAARASQ TNLTACTTTF LSPKSDPSSP  240
PLPKADPAPT EEKKDLELTV GPPSQQNMTN ISSSNAVQPE VDQIINGESD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462921890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794581e-142HF679458.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB52 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445045.11e-138transcription factor KUA1
TrEMBLC5YGT61e-137C5YGT6_SORBI; Uncharacterized protein
STRINGSb07g003330.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-39MYB_related family protein