PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921962
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 212aa    MW: 22859.4 Da    PI: 5.1006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921962genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-184999155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + +kGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  462921962 49 PVFKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 99
               579****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-134999IPR001471AP2/ERF domain
SMARTSM003802.6E-2750113IPR001471AP2/ERF domain
PROSITE profilePS5103221.58850107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2150108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-3050109IPR001471AP2/ERF domain
PRINTSPR003678.0E-85162IPR001471AP2/ERF domain
CDDcd000183.83E-2851109No hitNo description
PRINTSPR003678.0E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDVGAFSSDY SSGTPSPVGC GDDGSYMTVS SAPPKRRAGR TKFKETRHPV FKGVRRRNPG  60
RWVCEVREPH GKQRIWLGTF ETAEMAARAH DVAALALRGR GACLNFADSP RLLRIRRAAA  120
EAAEQFRPAP DQGNAAVEEA ITAAIPDAFS TSAAQQSAED HPYCVMDDRF DFGMQGYLDM  180
AQGMLIDPPP MDGASGNGGD DDDGGEVSLW SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13481061271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00644PBMTransfer from LOC_Os02g45450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462921962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685621e-116EU968562.1 Zea mays clone 322305 dehydration-responsive element-binding protein 1A mRNA, complete cds.
GenBankKJ7278731e-116KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-107dehydration-responsive element-binding protein 1G
SwissprotQ6EP777e-90DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG61e-106K3YVG6_SETIT; Uncharacterized protein
STRINGSi018262m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-34dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]