PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921965
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 173aa    MW: 18309.4 Da    PI: 4.0493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921965genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1433741256
        AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  462921965 33 SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 74
               69********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.8711081IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-143277IPR016177DNA-binding domain
SMARTSM003807.3E-133283IPR001471AP2/ERF domain
PfamPF008472.0E-83373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-203377IPR001471AP2/ERF domain
CDDcd000188.00E-123359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSVVPQGDTI TTGSATVPAA XXXXXXXXXX XXSGKWVSEI REPRKARRIW LGTYPTAEMA  60
AAAYDVAARA LRGADAAPDA AASGAVAPDQ QQLLPQGVSG CATAADAASC TASQQEFGND  120
VFMDEEAIFE MPQLLRNMAA GMMMSPPRIS PYTSDESPDP SETGDSLWSY HDP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462921965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277033e-66KJ727703.1 Zea mays clone pUT5642 AP2-EREBP transcription factor (EREB127) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147914.13e-49ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ909e-28ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3B6LT651e-49A0A3B6LT65_WHEAT; Uncharacterized protein
TrEMBLA0A446ULZ31e-49A0A446ULZ3_TRITD; Uncharacterized protein
STRINGLPERR02G22600.19e-49(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-12ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]