PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462922215

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 230aa MW: 24302 Da PI: 10.9557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462922215	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	5e-36	31	90	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ +kcprC+stntkfCyynny+lsqPr+fCk ryWtkGG lrnvPvGgg+rk k+ss 462922215 31 EAGVKCPRCESTNTKFCYYNNYNLSQPRHFCKPPPRYWTKGGVLRNVPVGGGCRKAKRSS 90 5679****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	31	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-30	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.018	34	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MQEFQSIPGL AGRLFGGAGG XXXXXXXXAR EAGVKCPRCE STNTKFCYYN NYNLSQPRHF 60 CKPPPRYWTK GGVLRNVPVG GGCRKAKRSS PSSSSSAPST PTSNEAHKNP RRGGWXXXXX 120 RHRHAVVEQR PRHEPLLDGR RGGAAGAHIR RPGGGAGVAL RASPAAAAPG VQLRRGAALQ 180 GRRFGAAGGG AAGLDAGIFD EQLGDASAAA AYWNAGSCWT DVQDPTVYLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462922215

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY955493	4e-66	AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	6e-27	DNA binding with one finger 2.4