PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462922248

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YB

Protein Properties

Length: 178aa MW: 19475.8 Da PI: 7.424

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462922248	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	119.9	1.1e-37	41	130	5	94
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++ lP+an++r+m++v+P++ kis ak+++++c++ef++fv++eas+ + +++r+ti+++d+ wa+ lGf+dyv+p+++y+++yre++ 462922248 41 NNGLPMANLVRLMRQVIPTQVKISTRAKQLTHDCAVEFVGFVGGEASECAVEQHRRTIAPEDFTWAFERLGFDDYVDPMTTYIRRYRETQ 130 6779***********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-27	41	131	IPR009072	Histone-fold
SuperFamily	SSF47113	1.05E-24	43	131	IPR009072	Histone-fold
Pfam	PF00808	8.8E-14	44	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGRKAKRGKK LCCTKGARGE KRPANHEGSD GEEHDATAAG NNGLPMANLV RLMRQVIPTQ 60 VKISTRAKQL THDCAVEFVG FVGGEASECA VEQHRRTIAP EDFTWAFERL GFDDYVDPMT 120 TYIRRYRETQ HVLGGTSCSF APAPAGGSCS FTGEEMQFLR SGQAPPLAEQ SYGYDGQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-27	34	128	3	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462922248

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	7e-52	nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	3e-38	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A2T8KXK0	2e-50	A0A2T8KXK0_9POAL; Uncharacterized protein
STRING	MLOC_75867.1	1e-46	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-30	nuclear factor Y, subunit B6