PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922341
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 180aa    MW: 19202.8 Da    PI: 7.9038
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922341genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17117145129
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 
                C++Cgt +Tp+WR+gp+g ++LCnaCG++
  462922341 117 CRHCGTDETPQWRKGPEGAPSLCNACGMR 145
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.13E-14110168No hitNo description
PROSITE profilePS5011413.376111144IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-14111147IPR013088Zinc finger, NHR/GATA-type
SMARTSM004015.5E-13111163IPR000679Zinc finger, GATA-type
CDDcd002024.55E-13116163No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15117145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVAADAPHGN SAAAAADDLF IGGPDLHAFF DHAALVEGKA GGGRAVREEE EEELEWLSNK  60
DAFPTVDTMA PPAEAGLVAT ALPQTTKGVL QPGAWSPPPA VSPRPRAPAK PKAGRRCRHC  120
GTDETPQWRK GPEGAPSLCN ACGMRAGLLL PAYRPLRSPT FSPELHTNVR RRIVEMCRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922341
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685360.19e-52GATA transcription factor 5-like
TrEMBLA0A368SJS62e-50A0A368SJS6_SETIT; Uncharacterized protein
STRINGSi039011m2e-45(Setaria italica)
STRINGSb01g020090.13e-44(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-22GATA transcription factor 5