PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922344
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 144aa    MW: 15380.4 Da    PI: 10.1704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922344genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-196497134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               C++Cgt +Tp+WR+gp+g  +LCnaCG++yr  +
  462922344 64 CRHCGTEETPQWRKGPEGAQSLCNACGMRYRAGK 97
               *******************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.0E-165897IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.7E-1758112IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.6795894IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-1660121No hitNo description
CDDcd002027.07E-1663113No hitNo description
PfamPF003209.1E-176497IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406489IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVVVGALRGG SAAVVTDEFF GGGDDLQGFF DDAGVLRPGQ VVASSPPPAL SPRPRAPAKA  60
GRRCRHCGTE ETPQWRKGPE GAQSLCNACG MRYRAGKLLP EYRPAKSPTF SPVLHSNRHR  120
RVVELARRRE EESAKAFPAA AAGD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922344
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685360.12e-43GATA transcription factor 5-like
SwissprotQ9FH572e-30GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A368SJS64e-42A0A368SJS6_SETIT; Uncharacterized protein
STRINGSb01g020090.17e-38(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.16e-25GATA transcription factor 14