PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922574
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 649aa    MW: 72272.6 Da    PI: 6.3496
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922574genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-094094461954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  462922574 409 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 446
                664559******************************88 PP
2BELL118.72.7e-38272343172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+qelq+k akL+ +l+eVd++Yk+y++q+q v++sF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  462922574 272 EKQELQNKVAKLMAMLDEVDRKYKHYYHQMQLVVASFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 343
                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-54196341IPR006563POX domain
PfamPF075266.1E-50202339IPR006563POX domain
PROSITE profilePS5007112.357387450IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-28389459IPR009057Homeodomain-like
SMARTSM003891.6E-9390454IPR001356Homeobox domain
CDDcd000863.18E-12390451No hitNo description
SuperFamilySSF466893.25E-17391456IPR009057Homeodomain-like
PfamPF059201.0E-17407446IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MRSTPSAILF WGNKKNLQPH SRHLGKEGAK SKNLSDVMDE EKDHLELYLA NQPASLVFSE  60
YNHQQNFMEL SGHPSSVPHD SSSKEATNMV TSLAEQRSFG PLKDMRNEML MHLMDGAQSG  120
GSNLIHNDAH NSVQLEFGML NNHNSTSVPS APGQGLSLSL NTHILAPSYP YWSVKPDLLA  180
PHSYQGDDSR IKNMQSEASQ AIRNSKYLKA AQELLDEIVS IWKTVKRKED KGHAEAGKAD  240
VKETEGGTNS EGVSSNPQES GANAAAELST AEKQELQNKV AKLMAMLDEV DRKYKHYYHQ  300
MQLVVASFDM VAGSGAAKPY TAVALQTISR HFRCLKDAIN DQISIIRKKL GEEENTSGKE  360
GRLTRLRYID QQLRQQRAFQ QYGMLQQNAW RPQRGLPENS VSILRAWLFE HFLHPYPKDS  420
EKLMLARQTG LTRSQISNWF INARVRLWKP MIEDMYKEEI GEAELDSNSS SDNVSRSKVK  480
VPSFDEKEDL KSSTSQPCQT SQLGESKANI SMMSLSGPPA GFNNEANPDD SFMNLMLKDQ  540
RPGETDGNLL HDAVAHHSDD SARFMAYHLA ELGRYGNNNV SLTLGLQHAE NGLSVPNTQP  600
TFAGAGHEDI YNVTAPLSGA PASSDYESTN QIDQQQRFEP SPLMHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16396453158Homeobox protein Meis1
4xrs_B5e-16396453158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792966.10.0BEL1-like homeodomain protein 7
RefseqXP_025792967.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0A8Y1Y70.0A0A0A8Y1Y7_ARUDO; Uncharacterized protein
STRINGSi034602m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-114BEL1-like homeodomain 6