PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462922612

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 118aa MW: 13518.6 Da PI: 9.6746

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462922612	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.8	3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l+ +++++G g+W++ ++ g+ R++k+c++rw +yl 462922612 14 RGRWTAEEDEILATYIAKHGEGNWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.795	9	65	IPR017930	Myb domain
SMART	SM00717	6.3E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-17	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-20	15	85	IPR009057	Homeodomain-like
CDD	cd00167	1.16E-11	16	61	No hit	No description
PROSITE profile	PS50090	4.53	62	107	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.0E-5	65	98	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILATYIA KHGEGNWRSL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNI SKEEEDIIIK LRGVHHHQAP RHPWEQVTRA LIILNTTATV FCYTPDPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462922612

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039485	1e-83	BT039485.1 Zea mays full-length cDNA clone ZM_BFc0015O24 mRNA, complete cds.
GenBank	EU959466	1e-83	EU959466.1 Zea mays clone 218238 myb-related protein Myb4 mRNA, complete cds.
GenBank	HQ858664	1e-83	HQ858664.1 Zea mays clone UT603 MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984641.1	2e-49	myb-related protein P
Swissprot	P27898	4e-48	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A096PZZ6	9e-49	A0A096PZZ6_MAIZE; MYB-related transcription factor (Fragment)
TrEMBL	A0A317Y7V1	9e-49	A0A317Y7V1_MAIZE; Myb-related protein P
TrEMBL	A0A3L6TPG0	9e-49	A0A3L6TPG0_PANMI; Myb-related protein P-like
TrEMBL	Q8S431	7e-49	Q8S431_MAIZE; A-type R2R3 Myb protein (Fragment)
STRING	Pavir.Ia03542.1.p	5e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	6e-45	myb domain protein 111

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]